Urea Cycle Disorders
Definition
- Definition: Inherited metabolic disorders characterized by defects in the enzymes or transporters of the urea cycle, leading to the accumulation of toxic nitrogenous waste (ammonia) and deficiency of arginine/citrulline.
- Function: The urea cycle converts toxic ammonia (produced from protein catabolism) into water-soluble urea for excretion.
Epidemiology and Genetics
- Incidence: Collectively ~1 in 35,000 live births; individual disorders are rare.
- Inheritance:
- Autosomal Recessive (AR): All UCDs (CPS1, ASS, ASL, ARG1, NAGS deficiencies).
- X-Linked Recessive: Ornithine Transcarbamylase (OTC) deficiency (most common UCD).
- Males: Severe, neonatal presentation.
- Females: Variable, ranging from asymptomatic to fatal hyperammonemic coma (due to skewed X-inactivation).

Etiology and Classification
Defects in the following enzymes/transporters:
- Proximal (Mitochondrial):
- N-acetylglutamate synthase (NAGS): Essential for activating CPS1.
- Carbamoyl phosphate synthetase 1 (CPS1): Rate-limiting step.
- Ornithine transcarbamylase (OTC).
- Distal (Cytosolic):
- Argininosuccinate synthetase (ASS): Causes Citrullinemia Type I.
- Argininosuccinate lyase (ASL): Causes Argininosuccinic aciduria.
- Arginase 1 (ARG1): Causes Argininemia.
- Transporters:
- ORNT1: Hyperornithinemia-hyperammonemia-homocitrullinemia (HHH) syndrome.
- Citrin (SLC25A13): Citrullinemia Type II.
Pathophysiology
- Hyperammonemia: Accumulation of ammonia crosses the blood-brain barrier, causing astrocyte swelling (cerebral edema), neurotransmitter dysregulation (glutamate/glutamine imbalance), and mitochondrial dysfunction.
- Respiratory Alkalosis: Direct stimulation of the respiratory center by ammonia causes central hyperventilation.
- Amino Acid Imbalance: Depletion of urea cycle intermediates (arginine, citrulline) disrupts protein synthesis and nitric oxide production.
Clinical Features
1. Neonatal Onset (Severe Form)
- Timing: Symptom-free interval of 24β48 hours (while placental clearance is lost and protein feeding begins), followed by rapid deterioration.
- Symptoms:
- Neurological: Poor feeding, lethargy, irritability, exaggerated startle, progressing to seizures, hypotonia, and coma.
- Respiratory: Hyperventilation (central) leading to respiratory alkalosis; apnea in late stages.
- Systemic: Vomiting, hypothermia, sepsis-like picture (but negative cultures).
- Signs of Cerebral Edema: Bulging fontanelle, posturing.
2. Late-Onset (Partial Defects)
- Precipitating Factors: Catabolic stress (infection, fever, surgery), high protein load, or postpartum stress.
- Symptoms:
- Episodic: Recurrent vomiting, headaches, ataxia, slurred speech, lethargy.
- Psychiatric: Agitation, combativeness, hallucinations, psychosis (often misdiagnosed).
- Dietary: Self-selected low-protein diet (protein aversion).
- Chronic: Failure to thrive, developmental delay, intellectual disability.
3. Enzyme-Specific Phenotypes
- Arginase Deficiency: Progressive spastic diplegia/tetraplegia, intellectual disability, seizures; severe hyperammonemia is less common.
- ASL Deficiency: Trichorrhexis nodosa (brittle hair), hepatomegaly, hypertension.
Investigations
1. Screening Tests (Immediate)
- Plasma Ammonia: Markedly elevated (>150 Β΅mol/L in neonates, often >1000 in crisis). Note: Sample on ice, analyze immediately.
- Arterial Blood Gas: Respiratory Alkalosis (High pH, Low pCO2). Differentiates from Organic Acidemias (which show Metabolic Acidosis with high anion gap).
- Blood Glucose: Normal (excludes hypoglycemia causes).
- Liver Function: Normal or mild elevation (excludes liver failure).
2. Diagnostic Biochemistry (Differentiation)
Use Plasma Amino Acids and Urine Orotic Acid.
| Disorder | Enzyme | Ammonia | Plasma Citrulline | Urine Orotic Acid | Other AA Findings |
|---|---|---|---|---|---|
| CPS1 / NAGS | CPS1/NAGS | High | Low/Absent | Low/Normal | High Glutamine, Alanine |
| OTC Deficiency | OTC | High | Low/Absent | High | High Glutamine |
| Citrullinemia I | ASS | High | Very High (>1000) | Normal/High | Low Arginine |
| ASAuria | ASL | High | Moderate High | Normal | High Argininosuccinic Acid |
| Argininemia | ARG1 | Mild/High | Normal | Normal | High Arginine |
Note: Citrulline is the key discriminator.
- Low Citrulline: Proximal defect (CPS1, NAGS, OTC). Check Orotic acid. High = OTC; Low = CPS1/NAGS.
- High Citrulline: Distal defect (ASS, ASL).

3. Confirmatory Tests
- Molecular Genetics: Gene panel (OTC, CPS1, ASS1, ASL, etc.).
- Enzyme Assay: Liver biopsy (rarely needed now) or RBCs (for Arginase/ASL).
- Newborn Screening: Can detect Citrullinemia and ASAuria (via elevated citrulline/argininosuccinate), but often misses OTC and CPS1.
Management
1. Acute Hyperammonemia (Medical Emergency)
Goal: Rapidly lower ammonia to prevent brain damage.
- Stop Nitrogen Intake: Suspend all protein intake (transiently, 24β48h).
- Reverse Catabolism: High caloric intake using IV 10% Dextrose (+/- Insulin) and Intralipid. Aim for high energy (100β120 kcal/kg).
- Ammonia Scavenging Pharmacotherapy:
- Sodium Benzoate: Conjugates with glycine
hippurate (excreted renal). - Sodium Phenylacetate/Phenylbutyrate: Conjugates with glutamine
phenylacetylglutamine (excreted renal). - IV Arginine: Essential for urea cycle function (except in Arginase deficiency) and prevents protein catabolism.
- Carglumic Acid (Carbaglu): Specific analog of N-acetylglutamate; rapidly normalizes ammonia in NAGS deficiency.
- Sodium Benzoate: Conjugates with glycine
- Dialysis: Indicated if ammonia >500 Β΅mol/L or failure of medical management after 3-6 hours. Hemodialysis is superior to peritoneal dialysis.
- Supportive: Treat seizures (avoid valproate as it inhibits urea cycle), treat cerebral edema, maintain ventilation.
2. Long-Term Management
- Dietary:
- Protein restriction (titrated to growth/neurodevelopment).
- Essential amino acid supplementation.
- Pharmacotherapy:
- Chronic scavengers: Oral Sodium Phenylbutyrate or Glycerol Phenylbutyrate.
- Arginine supplementation (for OTC, CPS1) or Citrulline (for OTC, CPS1) to drive the cycle.
- Monitoring: Plasma amino acids (keep glutamine normal), ammonia, growth, neurodevelopment.
- Liver Transplantation: Curative for hepatic enzyme defects (e.g., OTC, CPS1). Indicated for recurrent decompensations or poor metabolic control. Does not reverse pre-existing brain damage.
Prognosis
- Mortality: High in neonatal onset without rapid treatment.
- Morbidity: Strictly correlated with duration and severity of hyperammonemic coma.
- Sequelae: Intellectual disability, cerebral palsy, cortical blindness, and epilepsy are common in survivors of severe neonatal coma.
- Prospective: Liver transplant significantly improves quality of life and prevents further hyperammonemia.